Difference between revisions of "How to Prepare Data for BESA Connectivity"
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The channel description file is an ASCII file. Two types of files are supported: .elp files and .bsa files. | The channel description file is an ASCII file. Two types of files are supported: .elp files and .bsa files. | ||
| − | === ELP file format === | + | ==== ELP file format ==== |
| − | Elp files describe surface channel coordinates using spherical coordinates (theta, phi). It contains one line for each channel in the data file. | + | Elp files describe surface channel coordinates using spherical coordinates (theta, phi). It contains one line for each channel in the data file. Each line contains the following entries: |
| − | Each line contains the following entries: | + | |
{| class="wikitable" | {| class="wikitable" | ||
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|} | |} | ||
| − | === BSA file format === | + | ==== BSA file format ==== |
| − | Bsa files describe source channel data. They have a header section for format version and readability, | + | Bsa files describe source channel data. They have a header section for format version and readability, followed by one line for each source channel. |
| − | followed by one line for each source channel. | + | |
{| class="wikitable" | {| class="wikitable" | ||
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DipSrc (dipole)<br> | DipSrc (dipole)<br> | ||
SptCmp (spatial component)<br> | SptCmp (spatial component)<br> | ||
| − | | This column denotes the type of the | + | | This column denotes the type of the channel. |
| − | channel. | + | |
|- | |- | ||
| 2 | | 2 | ||
| x location | | x location | ||
| | | | ||
| − | | | + | | x coordinate of the channel. |
|- | |- | ||
| 3 | | 3 | ||
| y location | | y location | ||
| | | | ||
| − | | | + | | y coordinate of the channel. |
|- | |- | ||
| 4 | | 4 | ||
| z location | | z location | ||
| | | | ||
| − | | | + | | z coordinate of the channel. |
|- | |- | ||
| 5 | | 5 | ||
| x orientation | | x orientation | ||
| | | | ||
| − | | | + | | x orientation of the channel. |
|- | |- | ||
| 6 | | 6 | ||
| y orientation | | y orientation | ||
| | | | ||
| − | | | + | | y orientation of the channel. |
|- | |- | ||
| 7 | | 7 | ||
| z orientation | | z orientation | ||
| | | | ||
| − | | | + | | z orientation of the channel. |
|- | |- | ||
| 8 | | 8 | ||
Revision as of 08:52, 8 June 2018
| Module information | |
| Modules | BESA Research Basic or higher,
BESA Connectivity |
| Version | 7.0 or higher (BR), 1.0 or higher (BC) |
Contents
Note and general remarks
This article applies to data that are prepared using BESA Research. It is also possible to read data prepared by other programs. For the requirements, please refer to the BESA Connectivity manual, the chapter on "Loading data that were created in other software" and the chapter "File formats".
BESA Connectivity needs the following data:
- A file containing the binary data matrix. All epochs in the data file need to have the same length, the same stimulus position, the same baseline interval, and the same channel configuration.
- A header file in ASCII format.
- A channel description file in ASCII format. Two types of files are supported: elp files and bsa files.
File format descriptions
Header file format
The header file is a standard ASCII file. It contains the following lines:
| Line | Entry | Possible values | Description |
|---|---|---|---|
| 1 | BESA Generic Data v1.1 | File format version | |
| 2 | nChannels= | [1 ... 1024] | Number of channels |
| 3 | sRate= | [0.0001 ... ] | Sampling rate in Hz |
| 4 | nSamples= | [1 ...] | Total number of samples in file |
| 5 | format= | float | Format of the data in the binary file |
| 6 | file= | Name of binary file | Name of binary file |
| 7 | prestimulus= | 500.000, | Pre-stimulus interval in milliseconds. If negative, then the epoch starts after the stimulus. This effectively means that the value of prestimulus denotes the position of the stimulus in the epoch (milliseconds after epoch start). |
| 8 | epochs= | Number of epochs in the data file | |
| 9 | baselineStart= | Baseline start relative to the stimulus position. | |
| 10 | baselineEnd= | Baseline end relative to the stimulus position. Must be >= baselineStart | |
| 11 | epochLength= | Epoch length in milliseconds. This parameter is optional and can be added for convenience. If not given, the epoch length is calculated from the overall number of samples, the sampling rate, and the number of epochs. | |
| 12 | conditionName= | Name of the condition that identifies it. | |
| 13 | channelUnits= | Unit that the data are stored in the binary file. For EEG data, it should be one of µV, mV, V, µV/cm². For source data, it should be one of nAm, nAm/cm², nAm/cm³. For MEG data, it should be one of fT, pT, fT/cm, pT/cm, µV/cm².
This entry is repeated <nChannels> times. |
Channel configuration file format
The channel description file is an ASCII file. Two types of files are supported: .elp files and .bsa files.
ELP file format
Elp files describe surface channel coordinates using spherical coordinates (theta, phi). It contains one line for each channel in the data file. Each line contains the following entries:
| Column | Entry | Possible values | Description |
|---|---|---|---|
| 1 | Channel type | EEG (scalp electrode) SCP (scalp electrode) |
This column denotes the type of the channel. |
| 2 | Channel label | Fpz Fz |
Channel label. Is not allowed to contain blanks. |
| 3 | Azimuth (theta) | [-180.00 ... 180.00] | Spherical azimuth angle in degrees (optional entry). |
| 4 | Latitude (phi) | [-90.00 ... 90.00] | Spherical latitude angle in degrees (optional entry). |
BSA file format
Bsa files describe source channel data. They have a header section for format version and readability, followed by one line for each source channel.
| Column | Entry | Possible values | Description |
|---|---|---|---|
| 1 | Channel type | RegSrc (regional source)
DipSrc (dipole) |
This column denotes the type of the channel. |
| 2 | x location | x coordinate of the channel. | |
| 3 | y location | y coordinate of the channel. | |
| 4 | z location | z coordinate of the channel. | |
| 5 | x orientation | x orientation of the channel. | |
| 6 | y orientation | y orientation of the channel. | |
| 7 | z orientation | z orientation of the channel. | |
| 8 | Color | [0 … 255*255*255] | RGB color value |
