Difference between revisions of "Export Single Trial Data"

Revision as of 16:13, 7 March 2016

Rationale

This article describes how to export single-trial EEG or MEG raw data for further analysis in an external program, e.g. in Matlab.

Steps to follow

1 Load data in BESA

The data are then displayed in the review window. Now you can either

• use the ERP module to define a condition and reject any trials with artifacts (see the BESA Help section on ERP for more information), or
• directly move to the export of all epochs around a particular trigger.

2 Export data from BESA

Figure 1 "Export data" dialog

Select "File -> Export...". The export dialog opens:

Make sure that the options "Epochs around triggers" and "Original data" are selected. In the section "Target formats", choose the option of choice:

• If you want to create ASCII files for offline analysis, select "ASCII multiplexed" or "ASCII vectorized"
• If you want to analyze data directly in Matlab, select "Send to MATLAB"

For the "Interval..." select a long enough time span as shown in figure 2:

Figure 2 "Epoch around trigger" dialog

Then click the "Triggers..." button to select which trigger code or condition will be used. If you want to export the epochs around a trigger code: Make sure that the trigger code you want is selected - e.g. the trigger code 1 in this example.

Figure 3 "Trigger codes" dialog

If you want to export the epochs around a condition: Check the box "Conditions". Then ensure that the condition of choice is selected (e.g. condition "Rare" in the example.

Figure 4 "Epoch around condition" dialog

After clicking "OK" BESA Research either exports the data, or - if that option was chosen - sends the data to Matlab. In case of Matlab, it opens the Matlab window and creates the structure "besa_channels". From Matlab save the structure as "besa_channels.mat".

3 Data in Matlab

The Matlab structure "besa_channels" contains several fields like in the following example of a 64-channel EEG file with 39 trials that survived the artifact scan:

             datafile: [1x93 char]
         channeltypes: {1x64 cell}
        channellabels: {1x64 cell}
         channelunits: {1x64 cell}
   channelcoordinates: [64x9 double]
              montage: 'Original'
              filters: 'Filters off'
         samplingrate: 100
       HSPcoordinates: [3x3 double]
             HSPtypes: {'Fiducial'  'Fiducial'  'Fiducial'}
            HSPlabels: {'FidNz'  'FidT9'  'FidT10'}
           headcenter: [-0.0020 8.1247e-004 0.0291]
           headradius: 0.1021
   electrodethickness: 0
           structtype: 'besa_channels'
             datatype: 'Epoched_Data'
                 data: [1x39 struct]

The sub-structure data contains the latencies and the measured amplitudes for each channel and trial: » besa_channels.data

ans =

1x39 struct array with fields:

   amplitudes
   timeoffsetsecs
   latencies
   event